Publish figures and tables

Publishing turns a local notebook output into an EpistaBase artifact.

import biolake as bl

result = bl.publish_figure(fig, name="Dose response", format="svg")
result.catalog_asset_id
result.download_url

Publish a table:

table = bl.publish_table(df, name="IC50 summary")

What publish accepts

publish_figure() accepts:

• raw bytes
• matplotlib figures with savefig()
• plotly figures with to_image()

publish_table() accepts:

• raw bytes
• CSV text
• dataframe-like objects with to_csv() or to_parquet()

Experiment context

Published artifacts use BIOLAKE_EXPERIMENT_ID unless you pass experiment_id=.

bl.publish_table(df, name="Summary", experiment_id="experiment-id")

When BIOLAKE_NOTEBOOK_ID is present, the artifact can record notebook context. Successful bl.query() calls made earlier in the session can be included in the publish payload for lineage.

Naming

Name published outputs like figure captions, not scratch files: